EXAM 2 -Practice¶
To help you prepare for the exam practical, let’s do a mock exam. These are the types of questions I will ask you during the exam. I will give you points for each section, with the idea that I have to help you get past a particular section, you lose those points, but if you can do the rest of the steps, you can still get credit for that.
- Launch a
c4.2xlarge
instance with an additional 100Gb HD. _______ 5 points
- Update your machine and install the software using
apt-get
just like we did in lab 6. _________ 5 points
- Download the paired end read dataset located here:
https://s3.amazonaws.com/gen711/SRR1732744_1.fastq.gz
andhttps://s3.amazonaws.com/gen711/SRR1732744_2.fastq.gz
. _________________ 5 points
- Trim at Phred2, error correct using Rcorrector, and assemble using Trinity. 10 points
- Run Transrate as we did in lab 6, and report the transrate optimal score. _______________ 15 points